This is a selected list of publications most relevant for the lab. See full record on Google Scholar. See my review record on Publons.
Publications
- Vitali, A., Goldstein, M., Markfeld, M. and Pilosof, S., 2023. Local and regional processes drive distance decay in structure in a spatial multilayer plant-pollinator network. https://doi.org/10.32942/X28G7K
- Galai, G., Arbel, D., Klass, K., Grinshpan, I., Mizrahi, I. and Pilosof, S., 2023. Scale-dependent signatures of microbial co-occurrence revealed via multilayer network analysis. https://doi.org/10.32942/X2161C
- Frydman, N., Freilikhman, S., Talpaz, I. and Pilosof, S., 2023. Practical guidelines and the EMLN R package for handling ecological multilayer networks. http://doi.org/10.1111/2041-210X.14225
- Pilosof S. (2023) Conceptualizing microbe - plasmid communities as complex adaptive systems Trends in Microbiology. doi:10.1016/j.tim.2023.01.007
- Shapiro JT, Zorea A, Kav AB, Ontiveros VJ, Mizrahi I, Pilosof S. (2023) Multilayer networks of plasmid genetic similarity reveal potential pathways of gene transmission. The ISME Journal. Feb 9:1-1. doi:10.1038/s41396-023-01373-5
- Vitali A, Ruiz-Suarez S, Vazquez D, Schleuning M, Rodriguez-Cabal M, Sasal Y, Pilosof S. (2023) Invasive species modulate the structure and stability of a multilayer mutualistic network. Proc. R. Soc. B.290: doi:http://doi.org/10.1098/rspb.2023.0132
- Galai, G., He, X., Rotblat, B., & Pilosof, S. (2023). Ecological network analysis reveals cancer-dependent chaperone-client interaction structure and robustness. Nature communications, 14(1), 6277. https://doi.org/10.1038/s41467-023-41906-2
- Farage C, Edler D, Eklöf A, Rosvall M, Pilosof S. (2021) Identifying flow modules in ecological networks using Infomap. Methods Ecol Evol. doi:10.1111/2041-210x.13569
- Code for R-package accompanying the paper.
- Guerstein S, Romeo-Aznar V, Dekel M, Miron O, Davidovitch N, Puzis R, Pilosof S. (2021) The interplay between vaccination and social distancing strategies affects COVID19 population-level outcomes. PLoS Comput Biol. 17: e1009319.
- He Q, Pilosof S, Tiedje KE, Day KP, Pascual M. (2021) Frequency-Dependent Competition Between Strains Imparts Persistence to Perturbations in a Model of Plasmodium falciparum Malaria Transmission. Frontiers in Ecology and Evolution. 9:319.
- Pilosof S, Alcalá-Corona SA, Wang T, Kim T, Maslov S, Whitaker R, Pascual M (2020). The network structure and eco-evolutionary dynamics of CRISPR-induced immune diversification. Nature Ecology & Evolution, 4:1650–1660.
- Pilosof S, He Q, Tiedje KE, Ruybal S, Day K, Pascual M. (2019) Competition for hosts modulates vast antigenic diversity to generate persistent strain structure in Plasmodium falciparum. PLOS Biology 17(6): e3000336.
- He Q, Pilosof S, Tiedje KE, Ruybal-Pesantez A, Artzy-Randrup Y, Baskerville EB, Day K, Pascual M (2018) Networks of genetic similarity reveal non-neutral processes shape strain structure in Plasmodium falciparum. Nature Communications 9:1817
- Hutchinson MC*, Bramon Mora B*, Pilosof S, Barner AK, Kéfi S, Thébault E, et al. (2018) Seeing the forest for the trees: Putting multilayer networks to work for community ecology. Functional Ecology 1:55
- Pilosof S, Porter MA, Pascual M, Kéfi S (2017) The Multilayer Nature of Ecological Networks. Nature Ecology and Evolution 1:010.
- Pilosof S*, Greenbaum G*, Krasnov BR, Zelnik Y (2017) Asymmetric disease dynamics in multihost interconnected networks. Journal of Theoretical Biology 430:237-244
- Pilosof S, Morand S, Krasnov BR, Nunn CL (2015) Potential parasite transmission in multi-host networks based on parasite sharing. PLOS One 10.1371/journal.pone.0117909.
- Pilosof S, Fortuna M, Cosson J-F, Galan M, Ribas A, Chaisiri K, Segal E, Krasnov BR, Morand S, Bascompte J.(2014) Host-parasite network structure is associated with community-level immunogenetic diversity. Nature Communications. doi:10.1038/ncomms6172
- Pilosof S, Fortuna MA, Vinarski MV, Korallo-Vinarskaya NP, Krasnov BR (2013) Temporal dynamics of direct reciprocal and indirect effects in a host-parasite network. Journal of Animal Ecology 82:987–996