Computational Microbial Ecology

Unleash the Power of Bioinformatics to Decipher the Microbial World!

Are you intrigued by the hidden complexities of microbial communities? Do you want to harness the latest bioinformatic tools to uncover the secrets of their diversity, structure, and function? Join us for an immersive journey into the world of microbial community analysis!

In this course, you’ll gain the theoretical knowledge and practical skills needed to dissect and interpret the intricate interactions within microbial ecosystems. You’ll learn to navigate the Linux operating system, a cornerstone of bioinformatics, and master QIIME, a powerful software package for analyzing microbial communities from sequencing data.

Through hands-on experience with real datasets, you’ll delve into sequencing analysis pipelines, visualization techniques, and comparative genome analysis. You’ll even assemble genomes from scratch and assess microbial diversity and structure using concepts like alpha and beta diversity and dimensionality reduction.

But it’s not just about the tools – we’ll also provide a solid theoretical foundation, ensuring you understand the principles behind the methods you’re using. You’ll develop your scientific communication skills by critically assessing and presenting relevant literature, and you’ll culminate your learning with a final project that applies your knowledge to a real-world microbial community analysis scenario.

Key Topics:

  • Introduction to Linux and QIIME
  • Sequencing analysis pipelines
  • Visualization Techniques
  • Comparative Genome Analysis
  • Genome Assembly
  • Alpha and Beta Diversity
  • Dimensionality Reduction
  • Scientific Paper Presentation
  • Community Functionality
  • Bacterial Interaction Networks
  • Similarity Networks
  • Microbial Succession


Whether you’re a student, researcher, or professional seeking to enhance your data analysis skills, this course will empower you to unlock the mysteries of microbial communities. By the end, you’ll be equipped to contribute to groundbreaking research, make informed decisions in applied fields, and communicate your findings effectively.

Join us and embark on an exciting adventure into the world of microbial bioinformatics!