| Immune Related Datasets |
| Dataset ID |
Dataset Description |
Paper Title |
Citation |
Organism |
Conditions (#) |
Cell (#) |
| GSE48968 |
Primary mouse dendritic cells
(DCs) stimulated with three pathogenic components (LPS, PAM, PIC) at
different time points after stimulation (0h,1h, 2h, 4h, 6h) |
Single-cell
RNA-seq reveals dynamic paracrine control of cellular variation. |
Nature 2014 |
Mus musculus |
24 |
2412 |
| GSE81682 |
Haematopoeitic stem and
progenitor cells |
A single cell
resolution map of mouse haematopoietic stem and progenitor cell
differentiation. |
Blood 2016 |
Mus musculus |
3 |
1920 |
| E-MTAB-4388 |
transcriptional states of
individual CD4+ T cells during blood-stage Plasmodium chabaudi infection in
mice. |
Single-cell RNA-seq and
computational analysis using temporal mixture modeling resolves TH1/TFH fate
bifurcation in malaria |
Sci Immunol.
2017 |
Mus musculus |
12 |
1598 |
| E-MTAB-4888 |
CD4+ T cells from young and old
mice of CAST/EiJ and C57BL/6 |
Aging
increases cell-to-cell transcriptional variability upon immune stimulation |
Science 2017 |
Mus musculus |
11 |
1506 |
| GSE75478 |
Single-cell indexed RNA-Seq of
human hematopoietic stem and progenitors |
Human
haematopoietic stem cell lineage commitment is a continuous process. |
Nat Cell
Biol. 2017 |
Homo sapiens |
5 |
2414 |
| GSE74833 |
Th17 cell pathogenicity.
SubSeries: GSE75107, GSE75108, GSE75109, GSE75110, GSE75111 |
Single-Cell
Genomics Unveils Critical Regulators of Th17 Cell Pathogenicity. |
Cell 2015 |
Mus musculus |
5 |
722 |
| GSE59114 |
Long-term hematopoietic stem
cells (LT-HSC), short-term hematopoietic stem cells (ST-HSCs), and
multipotent progenitors (MPPs) from two mouse strains (C57BL/6 and DBA/2)
from young and old mice |
Single-cell
RNA-seq reveals changes in cell cycle and differentiation programs upon aging
of hematopoietic stem cells. |
Genome
Research 2015 |
Mus musculus |
12 |
2089 |
| GSE70245 |
CMP. SubSeries: GSE70236,
GSE70238, GSE70239, GSE70240, GSE70241, GSE70242, GSE70243, GSE70244,
GSE78907 |
Single-cell
analysis of mixed-lineage states leading to a binary cell fate choice |
Nature 2016 |
Mus musculus |
9 |
660 |
| E-MTAB-3346 |
Mouse medullary thyme ephitelial
cells (mTECs) - mature (MHCIIhi) mTECs and 3 subsets selected for their
particular tissue-restricted self antigens |
Single-cell
transcriptome analysis reveals coordinated ectopic gene-expression patterns
in medullary thymic epithelial cells |
Nature
Immunology 2015 |
Mus musculus |
4 |
293 |
| E-MTAB-2512 |
T helper 2 (Th2) cells |
Single-cell
RNA sequencing reveals T helper cells synthesizing steroids de novo to
contribute to immune homeostasis. |
Cell Reports
2014 |
Mus musculus |
1 |
91 |
| ERP010829 |
Wildtype and Bcl11a deficient
haematopoietic stem cells (HSC) |
Single-cell
transcriptomic reconstruction reveals cell cycle and multi-lineage
differentiation defects in Bcl11a-deficient hematopoietic stem cells. |
Genome
Biology 2015 |
Mus musculus |
3 |
288 |
| E-MTAB-3947 |
CD41 expressing cells from
kidney and heart of zebrafish |
Single-Cell
RNA-Sequencing Reveals a Continuous Spectrum of Differentiation in
Hematopoietic Cells |
Cell Reports
2016 |
Danio rerio (GRCz10) |
7 |
652 |
| E-MTAB-3857 |
CD4+ T lymphocytes from
uninfected mouse and 3 mice with Salmonella typhimurium infection (2 at day
14, 1 at day 49 post-infection) |
T cell fate
and clonality inference from single-cell transcriptomes |
Nature
Methods 2016 |
Mus musculus |
3 |
272 |
| ERP011804 |
Transcriptional regulatory
network during ILC2 commitment |
Single-cell
RNA-seq identifies a PD-1hi ILC progenitor and defines its development
pathway |
Nature 2016 |
Mus musculus |
1 |
768 |
| GSE100618 |
Single Cell RNA sequencing
analysis of human haemopoietic lympho-myeloid progenitor populations (LMPP,
MLP and GMP) |
Single-cell
analysis reveals the continuum of human lympho-myeloid progenitor cells |
Nat Immunol.
2017 |
Homo sapiens |
4 |
420 |
| GSE67120 |
Several mouse cell populations
closely related to HSC formation |
Tracing
haematopoietic stem cell formation at single-cell resolution. |
Nature 2016 |
Mus musculus |
8 |
181 |
| GSE86042 |
CD8 TILs from WT and MTKO mice.
SubSeries: GSE86028, GSE86030, GSE86031, GSE86039 |
A Distinct
Gene Module for Dysfunction Uncoupled from Activation in Tumor-Infiltrating T
Cells |
Cell 2016 |
Mus musculus |
2 |
1061 |
| GSE75659 |
Human T-cells. Mouse fibroblasts
from this experiment can be found in the non-immune part. |
Analysis of
allelic expression patterns in clonal somatic cells by single-cell RNA-seq |
Nature
Genetics 2016 |
Homo sapiens |
3 |
892 |
| GSE98969 |
Transcriptional profiling of
single cells from immune populations of mouse models of neurodegenerative
diseases with matched controls |
A Unique
Microglia Type Associated with Restricting Development of Alzheimer's
Disease. |
Cell 2017 |
Mus musculus |
28 |
35242 |
| GSE90486 |
Myeloid cells infected with
lentiviral vectors carrying different gRNAs |
Dissecting
Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq |
Cell 2016 |
Mus musculus |
14 |
23808 |
| GSE68981 |
HSC and MPPs from normal and
bled mice |
Single cell
transcriptomics reveals unanticipated features of early hematopoietic
precursors |
Nucleic Acids
Research 2016 |
Mus musculus |
4 |
460 |
| ERP005546 |
Activated T helper cells |
|
|
Mus musculus |
2 |
262 |
| GSE87849 |
Stem cell derived macrophages
(wildtype and SAMHD1 knockout) were single-cell cultured for 1h or 8h under 4
different media conditions |
The nature
and nurture of cell heterogeneity: accounting for macrophage gene-environment
interactions with single-cell RNA-Seq. |
BMC Genomics
2017 |
Homo sapiens |
24 |
503 |
| ERP015644 |
CD4 T cells 7 days after
infection or immunisation |
Opposing
Development of Cytotoxic and Follicular Helper CD4? T Cells Controlled
by the TCF-1-Bcl6 Nexus |
Cell Reports
2016 |
Mus musculus |
4 |
567 |
| GSE90799 |
Molecular reprogramming of
granulocyte/macrophage progenitor (GMP) clusters. SubSeries: GSE90797,
GSE90140 |
Myeloid
progenitor cluster formation drives emergency and leukaemic myelopoiesis. |
Nature 2017 |
Mus musculus |
7 |
958 |
| GSE77740 |
LMPP isolated from the bone
marrow of 4mo and 14mo wild-type C57BL/6J female mice |
Progressive
alterations in multipotent hematopoietic progenitors underlie lymphoid cell
loss in aging |
JEM 2016 |
Mus musculus |
2 |
167 |
| GSE70580 |
Human tonsil Innate lymphoid
cells (ILCs) |
The
heterogeneity of human CD127(+) innate lymphoid cells revealed by single-cell
RNA sequencing |
Nature
Immunology 2016 |
Homo sapiens |
4 |
648 |
| GSE107910 |
A single-cell atlas of the
developing mouse thymus |
A Single-Cell
Transcriptomic Atlas of Thymus Organogenesis Resolves Cell Types and
Developmental Maturation |
Immunity 2018 |
Mus musculus |
11 |
24279 |
| GSE74596 |
Mouse Va14 iNKT thymocyte
subsets |
Innate-like
functions of natural killer T cell subsets result from highly divergent gene
programs |
Nature
Immunology 2016 |
Mus musculus |
4 |
203 |
| E-MTAB-4825 |
Mouse B cells early class
switching of IgE |
Intrinsic
transcriptional heterogeneity in B cells controls early class switching to
IgE |
JEM 2016 |
Mus musculus |
5 |
213 |
| E-MTAB-4617 |
Spleen-derived LCK-expressing
cells from adult zebrafish |
Singel-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immune cell types |
Genome
Research 2016 |
Danio rerio (GRCz10) |
2 |
278 |
| GSE60297 |
Mature (MHCII high) medullary
thymic epithelial cells (mTEC) |
Population
and single-cell genomics reveal the Aire dependency, relief from Polycomb
silencing, and distribution of self-antigen expression in thymic epithelia. |
Genome
Research 2014 |
Mus musculus |
1 |
174 |
| GSE72857 |
Bone marrow myeloid progenitors |
Transcriptional
Heterogeneity and Lineage Commitment in Myeloid Progenitors. |
Cell 2015 |
Mus musculus |
8 |
10260 |
| GSE61533 |
Haematopoietic stem cells (HSC) |
Combined
Single-Cell Functional and Gene Expression Analysis Resolves Heterogeneity
within Stem Cell Populations. |
Cell Stem
Cell 2015 |
Mus musculus |
1 |
96 |
| GSE70657 |
Young (2-3 months) and old
(20-25 months) mouse HSCs |
Single-cell
RNA sequencing reveals molecular and functional platelet bias of aged
haematopoietic stem cell |
Nature
Communications 2016 |
Mus musculus |
2 |
135 |
| GSE54006 |
Dendritic cells and additional
hematopoietic cell types in steady state and after pathogen activation (LPS) |
Massively
parallel single-cell RNA-seq for marker-free decomposition of tissues into
cell types. |
Science 2014 |
Mus musculus |
13 |
4468 |
| GSE85527 |
CD8+ T-cells from 3 responders,
with and without EOMES-associated inhibitory receptors (TIGIT, KLRG1). |
Partial
exhaustion of CD8 T cells and clinical response to teplizumab in new-onset
type 1 diabetes |
Science
Immunology 2016 |
Homo sapiens |
6 |
219 |
| GSE65528 |
Macrophages at 4 time points
after Salmonella exposure |
Pathogen
Cell-to-Cell Variability Drives Heterogeneity in Host Immune Responses. |
Cell 2015 |
Mus musculus |
10 |
192 |
| GSE85152 |
Small intestinal ILCs (Innate
lymphoid cells) |
The Spectrum
and Regulatory Landscape of Intestinal Innate Lymphoid Cells Are Shaped by
the Microbiome |
Cell 2016 |
Mus musculus |
3 |
2701 |
| GSE71794 |
Murine hematopoietic stem cells,
ESC, and HSC-like cells derived from differentiation of embryonic stem cells |
Engineered
Murine HSCs Reconstitute Multi-lineage Hematopoiesis and Adaptive Immunity |
Cell Reports
2016 |
Mus musculus |
4 |
316 |
| GSE60781 |
Macrophage DC progenitor (MDP),
common DC progenitor (CDP), and pre-DC |
Identification
of cDC1- and cDC2-committed DC progenitors reveals early lineage priming at
the common DC progenitor stage in the bone marrow |
Nature
Immunology 2015 |
Mus musculus |
3 |
251 |
| GSE117498 |
Single-cell mRNA sequencing of
freshly isolated hematopoietic progenitors from human bone marrow |
A comprehensive single cell transcriptional landscape of human hematopoietic progenitors |
Nat Commun
2019 |
Homo sapiens |
11 |
21312 |
| E-MTAB-4619 |
CD4 T-helper cells from 3 sites,
5 days after Nippostrongylus brasiliensis infection |
Single-cell
analysis of CD4+ T-cell differentiation reveals three major cell states and
progressive acceleration of proliferation |
Genome
Biology 2016 |
Mus musculus |
3 |
210 |
| GSE64002 |
Hematopoietic stem and
progenitor cells from bone marrow cells |
Inflammation-Induced
Emergency Megakaryopoiesis Driven by Hematopoietic Stem Cell-like
Megakaryocyte Progenitors. |
Cell Stem
Cell 2015 |
Mus musculus |
2 |
20 |
| GSE89232 |
Primary human conventional
dendritic cells (cDCs), cord blood and blood pre-cDCs |
Human
dendritic cells (DCs) are derived from distinct circulating precursors that
are precommitted to become CD1c+? or CD141+ DCs |
JEM 2016 |
Homo sapiens |
3 |
957 |
| GSE84789 |
Normal and tumor infiltrating
B-cells |
Multiparametric
profiling of non-small-cell lung cancers reveals distinct immunophenotypes |
JCI Insight
2016 |
Homo sapiens |
2 |
192 |
| GSE100911 |
Dissecting hematopoietic and
renal cell heterogeneity in adult zebrafish. SuperSeries: GSE100913 |
Dissecting hematopoietic and
renal cell heterogeneity in adult zebrafish at single-cell resolutionusing RNA sequencing |
J Exp Med
2017 |
Danio rerio (GRCz10) |
6 |
246 |
| GSE74923 |
Lymphocytic leukemia cell line
(L1210) and CD8 T cells |
A
microfluidic platform enabling single-cell RNA-seq of multigenerational
lineages. |
Nature
Communications 2016 |
Mus musculus |
2 |
194 |
| GSE83142 |
Dormant (LRC) vs. dividing
(non-LRC) cells or drug treated vs. non-treated cells from two PDX ALL
Samples |
Characterization
of Rare, Dormant, and Therapy-Resistant Cells in Acute Lymphoblastic Leukemia |
Cancer Cell
2016 |
Homo sapiens |
5 |
185 |
| GSE65529 |
Macrophages at 4 time points
after LPS exposure |
Pathogen
Cell-to-Cell Variability Drives Heterogeneity in Host Immune Responses. |
Cell 2015 |
Mus musculus |
5 |
96 |
| CD56+ Natural Killer Cells |
CD56+ NK cells enriched from
fresh PBMCs. 92% pure by FACS |
Massively parallel digital transcriptional profiling of single cells. |
Nat Commun
2017 |
Homo sapiens |
1 |
8385 |
| CD14+ Monocytes |
CD14+ Monocytes enriched from
fresh PBMCs. |
Massively parallel digital transcriptional profiling of single cells. |
Nat Commun
2017 |
Homo sapiens |
1 |
2612 |
| GSE97168 |
Human stage IA lung
adenocarcinoma lesion and adjacent non-involved lung |
Innate Immune
Landscape in Early Lung Adenocarcinoma by Paired Single-Cell Analyses |
Cell 2017 |
Homo sapiens |
2 |
1920 |
| GSE70798 |
Wildtype and AireKO thymic
epithelial cells |
Aire controls
gene expression in the thymic epithelium with ordered stochasticity. |
Nature
Immunology 2015 |
Mus musculus |
2 |
200 |
| GSE98048 |
Single-cell comparison of
vehicle (control) and HDAC inhibitor (ricolinostat)-treated tumor
infiltrating T cells and macrophages |
Synergistic
Immunostimulatory Effects and Therapeutic Benefit of Combined Histone
Deacetylase and Bromodomain Inhibition in Non-Small Cell Lung Cancer. |
Cancer
Discov. 2017 |
Mus musculus |
4 |
192 |
| 33k PBMCs from a Healthy Donor |
Peripheral blood mononuclear
cells (PBMCs) from a healthy donor (same donor as pbmc3k and pbmc6k). |
|
|
Homo sapiens |
|
33148 |
| 3k Pan T Cells from a Healthy Donor |
Pan T cells isolated from
mononuclear cells of a healthy donor (same donor as t_4k). |
|
|
Homo sapiens |
|
3551 |
| 3k PBMCs from a Healthy Donor |
Peripheral blood mononuclear
cells (PBMCs) from a healthy donor (same donor as pbmc6k). |
|
|
Homo sapiens |
|
2700 |
| 4k Pan T Cells from a Healthy Donor |
Pan T cells isolated from
mononuclear cells of a healthy donor (same donor as t_3k). |
|
|
Homo sapiens |
|
4532 |
| 4k PBMCs from a Healthy Donor |
Peripheral blood mononuclear
cells (PBMCs) from a healthy donor (same donor as pbmc8k). |
|
|
Homo sapiens |
|
4352 |
| 6k PBMCs from a Healthy Donor |
Peripheral blood mononuclear
cells (PBMCs) from a healthy donor (same donor as pbmc3k). |
|
|
Homo sapiens |
|
5419 |
| 8k PBMCs from a Healthy Donor |
Peripheral blood mononuclear
cells (PBMCs) from a healthy donor (same donor as pbmc4k). |
|
|
Homo sapiens |
|
8391 |
| AML027 Post-transplant BMMCs |
|
Massively parallel digital transcriptional profiling of single cells |
Nat Commun
2017 |
Homo sapiens |
|
3965 |
| AML027 Pre-transplant BMMCs |
|
Massively parallel digital transcriptional profiling of single cells |
Nat Commun
2017 |
Homo sapiens |
|
3933 |
| AML035 Post-transplant BMMCs |
|
Massively parallel digital transcriptional profiling of single cells |
Nat Commun
2017 |
Homo sapiens |
|
909 |
| AML035 Pre-transplant BMMCs |
|
Massively parallel digital transcriptional profiling of single cells |
Nat Commun
2017 |
Homo sapiens |
|
3592 |
| CD19+ B Cells |
CD19+ B Cells enriched from
fresh PBMCs. |
Massively parallel digital transcriptional profiling of single cells |
Nat Commun
2017 |
Homo sapiens |
|
10085 |
| CD34+ Cells |
CD34+ Cells enriched from fresh
PBMCs, 45% pure by FACS |
Massively parallel digital transcriptional profiling of single cells |
Nat Commun
2017 |
Homo sapiens |
|
9232 |
| CD4+ Helper T Cells |
CD4+ Helper T Cells enriched
from fresh PBMCs. 99% pure by FACS |
Massively parallel digital transcriptional profiling of single cells |
Nat Commun
2017 |
Homo sapiens |
|
11213 |
| CD4+/CD25+ Regulatory T Cells |
CD4+/CD25+ Regulatory T Cells
enriched from fresh PBMCs. 95% pure by FACS |
Massively parallel digital transcriptional profiling of single cells |
Nat Commun
2017 |
Homo sapiens |
|
10263 |
| CD4+/CD45RA+/CD25- Naive T cells |
CD4+/CD45RA+/CD25- Naive T cells
enriched from fresh PBMCs. 98% pure by FACS |
Massively parallel digital transcriptional profiling of single cells |
Nat Commun
2017 |
Homo sapiens |
|
10479 |
| CD4+/CD45RO+ Memory T Cells |
CD4+/CD45RO+ Memory T Cells
enriched from fresh PBMCs. 98% pure by FACS |
Massively parallel digital transcriptional profiling of single cells |
Nat Commun
2017 |
Homo sapiens |
|
10224 |
| CD8+ Cytotoxic T cells |
CD8+ Cytotoxic T cells enriched
from fresh PBMCs. 98% pure by FACS |
Massively parallel digital transcriptional profiling of single cells |
Nat Commun
2017 |
Homo sapiens |
|
10209 |
| CD8+/CD45RA+ Naive Cytotoxic T Cells |
CD8+/CD45RA+ Naive Cytotoxic T
Cells enriched from fresh PBMCs. 99% pure by FACS |
Massively parallel digital transcriptional profiling of single cells |
Nat Commun
2017 |
Homo sapiens |
|
11953 |
| E-MTAB-4850 |
Transcriptomic profiling of
antigen-specific T cells at the single-cell level after clearance of
hepatitis C virus |
Impact of
sequencing depth and read length on single cell RNA sequencing data: lessons
from T cells |
bioRxiv 2017 |
Homo sapiens |
|
72 |
| Fresh 68k PBMCs (Donor A) |
Fresh 68k PBMCs (Donor A) |
Massively parallel digital transcriptional profiling of single cells |
Nat Commun
2017 |
Homo sapiens |
|
68579 |
| Frozen BMMCs (Healthy Control 1) |
Frozen BMMCs (Healthy Control 1) |
Massively parallel digital transcriptional profiling of single cells |
Nat Commun
2017 |
Homo sapiens |
|
1985 |
| Frozen BMMCs (Healthy Control 2) |
Frozen BMMCs (Healthy Control 2) |
Massively parallel digital transcriptional profiling of single cells |
Nat Commun
2017 |
Homo sapiens |
|
2472 |
| Frozen PBMCs (Donor A) |
Frozen PBMCs (Donor A) |
Massively parallel digital transcriptional profiling of single cells |
Nat Commun
2017 |
Homo sapiens |
|
2900 |
| Frozen PBMCs (Donor B) |
Frozen PBMCs (Donor B) |
Massively parallel digital transcriptional profiling of single cells |
Nat Commun
2017 |
Homo sapiens |
|
7783 |
| Frozen PBMCs (Donor C) |
Frozen PBMCs (Donor C) |
Massively parallel digital transcriptional profiling of single cells |
Nat Commun
2017 |
Homo sapiens |
|
9519 |
| GSE89405 |
Gene expression profiles for key
stages of T cell differentiation |
Early
transcriptional and epigenetic regulation of CD8+ T cell differentiation
revealed by single-cell RNA sequencing. |
Nat Immunol.
2017 |
Mus musculus |
|
304 |
| GSE92495 |
Profile thousands of primary
human macrophages exposed to tuberculosis. |
Seq-Well:
portable, low-cost RNA sequencing of single cells at high throughput. |
Nat Methods
2017 |
Homo sapiens; Mus musculus |
|
96 |
| GSE94383 |
RAW 264.7 Cell Line (murine
Macrophage) stimulated with LPS on a fluidigm C1 chip |
Measuring
Signaling and RNA-Seq in the Same Cell Links Gene Expression to Dynamic
Patterns of NF-kB Activation. |
Cell Syst.
2017 |
Mus musculus |
|
839 |
| GSE94820 |
Enriched immune cell fractions
isolated from healthy blood PBMCs |
Single-cell
RNA-seq reveals new types of human blood dendritic cells, monocytes, and
progenitors |
Science 2017 |
Homo sapiens |
|
2384 |
| GSE98638 |
T cells isolated from peripheral
blood, tumor and adjacent normal tissues from hepatocellular carcinoma
patients. |
Landscape of
Infiltrating T Cells in Liver Cancer Revealed by Single-Cell Sequencing |
Cell 2017 |
Homo sapiens |
|
5063 |
| GSE99068 |
RNA sequencing of two types of
NK cells from mouse and human (IL6Ra negative NK cells vs. IL6Ra positive NK
cells) and mouse organs (IL6Ra_NKdel vs. IL6Ra_NKflox) |
IL-6/Stat3-Dependent
Induction of a Distinct, Obesity-Associated NK Cell Subpopulation
Deteriorates Energy and Glucose Homeostasis |
Cell Metab.
2017 |
Homo sapiens; Mus musculus |
|
63 |
| Jurkat Cells |
Jurkat Cells |
Massively parallel digital transcriptional profiling of single cells. |
Nat Commun
2017 |
Homo sapiens |
|
3258 |
| E-MTAB-4850 |
Transcriptomic profiling of
antigen-specific T cells at the single-cell level after clearance of
hepatitis C virus |
Impact of
sequencing depth and read length on single cell RNA sequencing data: lessons
from T cells |
bioRxiv 2017 |
Homo sapiens |
|
72 |
| GSE80212 |
Single-cell RNA-Seq Identifies A
Highly Functional Dendritic Cell Subset In HIV-1 Elite Controllers |
|
|
Homo sapiens |
|
151 |
| GSE89405 |
Gene expression profiles for key
stages of T cell differentiation |
Early
transcriptional and epigenetic regulation of CD8+ T cell differentiation
revealed by single-cell RNA sequencing. |
Nat Immunol.
2017 |
Mus musculus |
|
304 |
| Human cell
Atlas |
The hematopoietic system |
The Human Cell Atlas Bone Marrow Single-Cell Interactive Web Portal |
Exp Hematol
2018 |
Homo sapiens |
|
0 |
| GSE100501 |
DNA sequencing of both mRNA and
antibodies in a single workflow in human PBMCs and na?ve CD8+ T cells that
were costimulated with either 1) aCD3 and aCD28 or 2) aCD3, aCD28 and aCD27 |
Multiplexed
quantification of proteins and transcripts in single cells |
Nat
Biotechnol 2017 |
Homo sapiens |
|
0 |
| EGAS00001002560 |
single-cell RNA sequencing in
~25,000 peripheral blood mononuclear cells (PBMCs) of 45 donors |
Single-cell RNA sequencing identifies celltype-specific cis-eQTLs and co-expression QTLs |
Nat Genet
2018 |
Homo sapiens |
|
28855 |
| GSE112903 |
Droplet-based scRNAseq on sorted
mouse pLN CD45- CD31- cells from uninfected mice and mice at day 15
post-infection with LCMV-Armstrong |
Single-Cell RNA Sequencing of Lymph Node Stromal Cells Reveals Niche-Associated
Heterogeneity |
Immunity 2018 |
Mus musculus |
|
0 |
| GSE106973 |
Single cell RNA sequencing of
murine basophil/mast cell progenitors and granulocyte/monocyte progenitors |
A single-cell hematopoietic landscape resolves 8 lineagetrajectories and defects in Kit mutant mice |
Blood 2018 |
Mus musculus |
|
141 |
| GSE107727 |
Single cell RNA sequencing of
murine basophil/mast cell progenitors and granulocyte/monocyte progenitors |
A single-cell hematopoietic landscape resolves 8 lineagetrajectories and defects in Kit mutant mice |
Blood 2018 |
Mus musculus |
|
44802 |
| GSE104054 |
Single cells from the specific
immune niches in the lymph node and spleen |
Spatial
reconstruction of immune niches by combining photoactivatable reporters and
scRNA-seq |
Science 2017 |
Mus musculus |
|
0 |
| E-MTAB-6051 |
Single-cell RNA sequencing of
OT-I CD8+ T cells after stimulation with different affinity |
T cell
cytolytic capacity is independent of initial stimulation strength |
Nat Immunol.
2018 |
Mus musculus |
|
572 |
| GSE114895 |
Thymic tuft cell single-cell
mRNA analysis |
Thymic tuft
cells promote an IL-4-enriched medulla and shape thymocyte development |
Nature 2018 |
Mus musculus |
|
300 |
| GSE103967 |
Transcriptional profiling of
single cells from the stroma of mouse thymus |
Single-cell mapping
of the thymic stroma identifies IL-25-producing tuft epithelial cells |
Nature 2018 |
Mus musculus |
|
0 |
| GSE103968 |
Transcriptional profiling of
single cells from the stroma of mouse thymus |
Single-cell mapping
of the thymic stroma identifies IL-25-producing tuft epithelial cells |
Nature 2018 |
Mus musculus |
|
0 |
| GSE119562 |
Natural Killer cell
heterogeneity in humans and mice |
High-Dimensional Single-Cell Analysis Identifies Organ-Specific Signatures and Conserved NKCell Subsets in Humans and Mice |
Immunity 2018 |
Homo sapiens; Mus musculus |
|
0 |
| GSE111664 |
Drop-seq analysis of
bleomycin-treated and control mouse lung single-cell suspensions |
Reference-based
analysis of lung single-cell sequencing reveals a transitional profibrotic
macrophage |
Nat Immunol
2019 |
Mus musculus |
|
0 |
| E-MTAB-7142 |
Drop-seq analysis of
bleomycin-treated and control mouse lung single-cell suspensions |
Reference-based
analysis of lung single-cell sequencing reveals a transitional profibrotic
macrophage |
Nat Immunol
2019 |
Mus musculus |
|
0 |
| GSE118948 |
CD45+ cells isolated from
different CNS compartments (including leptomeninges, perivascular space and
parenchyma, and choroid plexus) and Ly6Chigh and Ly6Clow monocytes from blood |
Single-cell
profiling identifies myeloid cell subsets with distinct fates during
neuroinflammation. |
Science 2019 |
Mus musculus |
|
0 |
| GSE124731 |
|
Lymphocyte innateness defined by transcriptional states reflects a balance between proliferationand effector functions. |
Nat Commun
2019 |
Homo sapiens |
|
0 |
| GSE122846 |
Single, live, CD3+CD8a–TCRγδ–CD4+/– T-cells from one human fetal intestines |
Memory CD4+ T cells are generated in the human fetal intestine |
Nat Immunol
2019 |
Homo sapiens |
|
0 |
| GSE116256 |
Bone marrow aspirates of five
healthy control donors, 16 AML patients at diagnosis, and 19 matched samples
during treatment |
Single-Cell
RNA-Seq Reveals AML Hierarchies Relevant to Disease Progression and Immunity |
Cell 2019 |
Homo sapiens |
|
0 |
| GSE125044 |
single cells from
pathogen-injected mouse auricular lymph nodes |
Single-Cell
Analysis of Diverse Pathogen Responses Defines a Molecular Roadmap for
Generating Antigen-Specific Immunity |
Cell Syst
2019 |
Mus musculus |
|
0 |
| EGAS00001003363 |
Single-cell transcriptional
profiling of immune cells from human melanoma tumors and several matching
pbmc samples |
Dysfunctional
CD8 T Cells Form a Proliferative, Dynamically Regulated Compartment within
Human Melanoma |
Cell 2019 |
Homo sapiens |
|
0 |
| GSE128985 |
Time course RNA-seq profiling in
sorted endothelial, epithelial, immune, and mesenchymal-derived cells from
E16.5, E18.5, P7 and P28 wild-type C57BL6 mice |
|
|
Mus musculus |
|
0 |
| GSE108892 |
SubSeries: GSE108891, GSE118436 |
The bone
marrow microenvironment at single-cell resolution |
Nature 2019 |
Mus musculus |
|
0 |
| GSE111731 |
Parallel host-pathogen
transcriptional dynamics using sorted subpopulations and single, Candida
albicans infected macrophages |
Coordinated host-pathogen transcriptional dynamics revealed using sorted subpopulations and single macrophages infected with Candida albicans |
Nat Commun
2019 |
Candida albicans; Mus
musculus |
|
0 |
| GSE127465 |
scRNAseq of RBC-depleted cells
from non-small cell lung tumor and from blood of 7 patients. ScRNAseq of
CD45-positive cells from lungs of 2 healthy mice and 2 lung tumor-bearing
mice |
Single-Cell
Transcriptomics of Human and Mouse Lung Cancers Reveals Conserved Myeloid
Populations across Individuals and Species |
Immunity 2019 |
Homo sapiens; Mus musculus |
|
0 |
| GSE127005 |
Single cell transcriptomic
analysis (InDrops) of mouse mesenchymal stromal cells (mSCs or FAPs,
fibro-adipogenic progenitors) isolated from lymph node, muscle and visceral
adipose tissue |
Distinct immunocyte-promoting and adipocyte-generating
stromal components coordinate adipose tissue immune and metabolic tenors |
Science Immunology 2019 |
Mus musculus |
|
0 |
| GSE128855 (GSE128854 ) |
single-cell atlas of mouse brain
macrophages |
A single-cell atlas of mouse brain macrophages reveals unique transcriptional identities shapedby ontogeny and tissue environment |
Nat Neurosci.
2019 |
Mus musculus |
|
0 |
| GSE111898 |
SubSeries: GSE111894, GSE111896 |
Single-cell
transcriptomic analysis of tissue-resident memory T cells in human lung
cancer |
J Exp Med
2019 |
Homo sapiens |
|
0 |
| GSE122084 |
SubSeries: GSE122083, GSE132300 |
Predicting bacterial infection outcomes using single cell RNA-sequencing analysis of humanimmune cells |
Nat Commun
2019 |
Homo sapiens |
|
0 |
|
|
|
|
|
|
|