{"id":34,"date":"2023-07-28T21:19:48","date_gmt":"2023-07-28T18:19:48","guid":{"rendered":"https:\/\/lifewp.bgu.ac.il\/wp\/kashkush\/?page_id=34"},"modified":"2023-08-02T19:36:14","modified_gmt":"2023-08-02T16:36:14","slug":"publications","status":"publish","type":"page","link":"https:\/\/lifewp.bgu.ac.il\/wp\/kashkush\/?page_id=34","title":{"rendered":"Publications"},"content":{"rendered":"\n<p class=\"has-medium-font-size wp-block-paragraph\"><strong><mark style=\"background-color:rgba(0, 0, 0, 0);color:#0e9ca6\" class=\"has-inline-color\">2023<\/mark><\/strong><br>Bariah, I., Gribun, L., &amp; Kashkush, K. (2023). Transposable elements are associated with genome-specific gene expression in bread wheat. Frontiers in Plant Science, 13, 1072232. <a rel=\"noreferrer noopener\" href=\"https:\/\/www.researchgate.net\/publication\/367053721_Transposable_elements_are_associated_with_genome-specific_gene_expression_in_bread_wheat\" data-type=\"URL\" data-id=\"https:\/\/www.researchgate.net\/publication\/367053721_Transposable_elements_are_associated_with_genome-specific_gene_expression_in_bread_wheat\" target=\"_blank\">link<\/a><br><br><strong><mark style=\"background-color:rgba(0, 0, 0, 0);color:#0e9ca6\" class=\"has-inline-color\">2022<\/mark><\/strong><br>Fridman, E., Tiwari, L., Prusty, M., Beery, A., Bodenheimer, S., Doron-Faigenboim, A., \u2026 &amp; Kenkyuka, M. D. N. D. N. (2022). Cytonuclear diversity underlying clock and growth adaptation to warming environments in wild barley (Hordeum vulgare ssp. spontaneum).\u200f <a rel=\"noreferrer noopener\" href=\"https:\/\/www.researchgate.net\/publication\/365935955_Cytonuclear_diversity_underlying_clock_and_growth_adaptation_to_warming_environments_in_wild_barley_Hordeum_vulgare_ssp_spontaneum?_sg%5B0%5D=s0vlhRaOPmDmnswzuBoS_xs50I0-cNT7KJzUwT6lKPTIqk5DLMnXJpYvHAYxQRIhcIO2Do9hoYa7Hr3mTB7r2ujHRoialnhh5gmqPpHw.cIpMHfCDDa_DUbuKBIkcYY-p62azlLLh_iPfNytON7PHbrtp1smdV8LTkN4EaAonoREZBbwSqvZdoyqo097LFw\" data-type=\"URL\" data-id=\"https:\/\/www.researchgate.net\/publication\/365935955_Cytonuclear_diversity_underlying_clock_and_growth_adaptation_to_warming_environments_in_wild_barley_Hordeum_vulgare_ssp_spontaneum?_sg%5B0%5D=s0vlhRaOPmDmnswzuBoS_xs50I0-cNT7KJzUwT6lKPTIqk5DLMnXJpYvHAYxQRIhcIO2Do9hoYa7Hr3mTB7r2ujHRoialnhh5gmqPpHw.cIpMHfCDDa_DUbuKBIkcYY-p62azlLLh_iPfNytON7PHbrtp1smdV8LTkN4EaAonoREZBbwSqvZdoyqo097LFw\" target=\"_blank\">link<\/a><br><br>Ubi, B. E., Gorafi, Y. S. A., Yaakov, B., Monden, Y., Kashkush, K., &amp; Tsujimoto, H. (2022). Exploiting the miniature inverted-repeat transposable elements insertion polymorphisms as an efficient DNA marker system for genome analysis and evolutionary studies in wheat and related species. Frontiers in Plant Science, 13, 995586.\u200f <a rel=\"noreferrer noopener\" href=\"https:\/\/www.researchgate.net\/publication\/363239754_Exploiting_the_miniature_inverted-repeat_transposable_elements_insertion_polymorphisms_as_an_efficient_DNA_marker_system_for_genome_analysis_and_evolutionary_studies_in_wheat_and_related_species?_sg%5B0%5D=s0vlhRaOPmDmnswzuBoS_xs50I0-cNT7KJzUwT6lKPTIqk5DLMnXJpYvHAYxQRIhcIO2Do9hoYa7Hr3mTB7r2ujHRoialnhh5gmqPpHw.cIpMHfCDDa_DUbuKBIkcYY-p62azlLLh_iPfNytON7PHbrtp1smdV8LTkN4EaAonoREZBbwSqvZdoyqo097LFw\" data-type=\"URL\" data-id=\"https:\/\/www.researchgate.net\/publication\/363239754_Exploiting_the_miniature_inverted-repeat_transposable_elements_insertion_polymorphisms_as_an_efficient_DNA_marker_system_for_genome_analysis_and_evolutionary_studies_in_wheat_and_related_species?_sg%5B0%5D=s0vlhRaOPmDmnswzuBoS_xs50I0-cNT7KJzUwT6lKPTIqk5DLMnXJpYvHAYxQRIhcIO2Do9hoYa7Hr3mTB7r2ujHRoialnhh5gmqPpHw.cIpMHfCDDa_DUbuKBIkcYY-p62azlLLh_iPfNytON7PHbrtp1smdV8LTkN4EaAonoREZBbwSqvZdoyqo097LFw\" target=\"_blank\">link<\/a><br><br>Varotto, S., Krugman, T., Aiese Cigliano, R., Kashkush, K., Kondi\u0107-\u0160pika, A., Aravanopoulos, F. A., \u2026 &amp; Miladinovi\u0107, D. (2022). Exploitation of epigenetic variation of crop wild relatives for crop improvement and agrobiodiversity preservation. Theoretical and Applied Genetics, 135(11), 3987-4003. <a rel=\"noreferrer noopener\" href=\"https:\/\/www.researchgate.net\/publication\/361205186_Exploitation_of_epigenetic_variation_of_crop_wild_relatives_for_crop_improvement_and_agrobiodiversity_preservation?_sg%5B0%5D=s0vlhRaOPmDmnswzuBoS_xs50I0-cNT7KJzUwT6lKPTIqk5DLMnXJpYvHAYxQRIhcIO2Do9hoYa7Hr3mTB7r2ujHRoialnhh5gmqPpHw.cIpMHfCDDa_DUbuKBIkcYY-p62azlLLh_iPfNytON7PHbrtp1smdV8LTkN4EaAonoREZBbwSqvZdoyqo097LFw\" data-type=\"URL\" data-id=\"https:\/\/www.researchgate.net\/publication\/361205186_Exploitation_of_epigenetic_variation_of_crop_wild_relatives_for_crop_improvement_and_agrobiodiversity_preservation?_sg%5B0%5D=s0vlhRaOPmDmnswzuBoS_xs50I0-cNT7KJzUwT6lKPTIqk5DLMnXJpYvHAYxQRIhcIO2Do9hoYa7Hr3mTB7r2ujHRoialnhh5gmqPpHw.cIpMHfCDDa_DUbuKBIkcYY-p62azlLLh_iPfNytON7PHbrtp1smdV8LTkN4EaAonoREZBbwSqvZdoyqo097LFw\" target=\"_blank\">link<\/a><br><a rel=\"noreferrer noopener\" href=\"https:\/\/www.researchgate.net\/publication\/361205186_Exploitation_of_epigenetic_variation_of_crop_wild_relatives_for_crop_improvement_and_agrobiodiversity_preservation?_sg%5B0%5D=s0vlhRaOPmDmnswzuBoS_xs50I0-cNT7KJzUwT6lKPTIqk5DLMnXJpYvHAYxQRIhcIO2Do9hoYa7Hr3mTB7r2ujHRoialnhh5gmqPpHw.cIpMHfCDDa_DUbuKBIkcYY-p62azlLLh_iPfNytON7PHbrtp1smdV8LTkN4EaAonoREZBbwSqvZdoyqo097LFw\" data-type=\"URL\" data-id=\"https:\/\/www.researchgate.net\/publication\/361205186_Exploitation_of_epigenetic_variation_of_crop_wild_relatives_for_crop_improvement_and_agrobiodiversity_preservation?_sg%5B0%5D=s0vlhRaOPmDmnswzuBoS_xs50I0-cNT7KJzUwT6lKPTIqk5DLMnXJpYvHAYxQRIhcIO2Do9hoYa7Hr3mTB7r2ujHRoialnhh5gmqPpHw.cIpMHfCDDa_DUbuKBIkcYY-p62azlLLh_iPfNytON7PHbrtp1smdV8LTkN4EaAonoREZBbwSqvZdoyqo097LFw\" target=\"_blank\">\u200f<\/a><br><strong><mark style=\"background-color:rgba(0, 0, 0, 0);color:#0e9ca6\" class=\"has-inline-color\">2021<\/mark><\/strong><br>Bdolach, E., Prusty, M. R., Tiwari, L. D., Kashkush, K., &amp; Fridman, E. (2021). Plasmotype condition nuclear pleiotropic effects on clock and fitness in barley. bioRxiv, 2021-11.\u200f <a rel=\"noreferrer noopener\" href=\"https:\/\/www.researchgate.net\/publication\/355865732_Plasmotype_condition_nuclear_pleiotropic_effects_on_clock_and_fitness_in_barley?_sg%5B0%5D=s0vlhRaOPmDmnswzuBoS_xs50I0-cNT7KJzUwT6lKPTIqk5DLMnXJpYvHAYxQRIhcIO2Do9hoYa7Hr3mTB7r2ujHRoialnhh5gmqPpHw.cIpMHfCDDa_DUbuKBIkcYY-p62azlLLh_iPfNytON7PHbrtp1smdV8LTkN4EaAonoREZBbwSqvZdoyqo097LFw\" data-type=\"URL\" data-id=\"https:\/\/www.researchgate.net\/publication\/355865732_Plasmotype_condition_nuclear_pleiotropic_effects_on_clock_and_fitness_in_barley?_sg%5B0%5D=s0vlhRaOPmDmnswzuBoS_xs50I0-cNT7KJzUwT6lKPTIqk5DLMnXJpYvHAYxQRIhcIO2Do9hoYa7Hr3mTB7r2ujHRoialnhh5gmqPpHw.cIpMHfCDDa_DUbuKBIkcYY-p62azlLLh_iPfNytON7PHbrtp1smdV8LTkN4EaAonoREZBbwSqvZdoyqo097LFw\" target=\"_blank\">link<\/a><br><br>Liu, Z., Zhao, H., Yan, Y., Wei, M. X., Zheng, Y. C., Yue, E. K., \u2026 &amp; Xu, J. H. (2021). Extensively current activity of transposable elements in natural rice accessions revealed by singleton insertions. Frontiers in Plant Science, 12, 745526.\u200f <a rel=\"noreferrer noopener\" href=\"https:\/\/www.researchgate.net\/publication\/360963712_Extensively_Current_Activity_of_Transposable_Elements_in_Natural_Rice_Accessions_Revealed_by_Singleton_Insertions\" data-type=\"URL\" data-id=\"https:\/\/www.researchgate.net\/publication\/360963712_Extensively_Current_Activity_of_Transposable_Elements_in_Natural_Rice_Accessions_Revealed_by_Singleton_Insertions\" target=\"_blank\">link<\/a><br><br>Prusty, M. R., Bdolach, E., Yamamoto, E., Tiwari, L. D., Silberman, R., Doron\u2010Faigenbaum, A., \u2026 &amp; Fridman, E. (2021). Genetic loci mediating circadian clock output plasticity and crop productivity under barley domestication. New Phytologist, 230(5), 1787-1801.\u200f <a href=\"https:\/\/www.researchgate.net\/publication\/349400554_Genetic_loci_mediating_circadian_clock_output_plasticity_and_crop_productivity_under_barley_domestication?_sg%5B0%5D=s0vlhRaOPmDmnswzuBoS_xs50I0-cNT7KJzUwT6lKPTIqk5DLMnXJpYvHAYxQRIhcIO2Do9hoYa7Hr3mTB7r2ujHRoialnhh5gmqPpHw.cIpMHfCDDa_DUbuKBIkcYY-p62azlLLh_iPfNytON7PHbrtp1smdV8LTkN4EaAonoREZBbwSqvZdoyqo097LFw\" data-type=\"URL\" data-id=\"https:\/\/www.researchgate.net\/publication\/349400554_Genetic_loci_mediating_circadian_clock_output_plasticity_and_crop_productivity_under_barley_domestication?_sg%5B0%5D=s0vlhRaOPmDmnswzuBoS_xs50I0-cNT7KJzUwT6lKPTIqk5DLMnXJpYvHAYxQRIhcIO2Do9hoYa7Hr3mTB7r2ujHRoialnhh5gmqPpHw.cIpMHfCDDa_DUbuKBIkcYY-p62azlLLh_iPfNytON7PHbrtp1smdV8LTkN4EaAonoREZBbwSqvZdoyqo097LFw\" target=\"_blank\" rel=\"noreferrer noopener\">link<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong><mark style=\"background-color:rgba(0, 0, 0, 0);color:#0e9ca6\" class=\"has-inline-color\">2020<\/mark><br><\/strong>Bariah, I., Keidar-Friedman, D., &amp; Kashkush, K. (2020). Where the wild things are: transposable elements as drivers of structural and functional variations in the wheat genome. Frontiers in Plant Science, 11, 585515.\u200f <a rel=\"noreferrer noopener\" href=\"https:\/\/www.researchgate.net\/publication\/345240576_Where_the_Wild_Things_Are_Transposable_Elements_as_Drivers_of_Structural_and_Functional_Variations_in_the_Wheat_Genome\" data-type=\"URL\" data-id=\"https:\/\/www.researchgate.net\/publication\/345240576_Where_the_Wild_Things_Are_Transposable_Elements_as_Drivers_of_Structural_and_Functional_Variations_in_the_Wheat_Genome\" target=\"_blank\">link<\/a><\/p>\n\n\n\n<p class=\"has-medium-font-size wp-block-paragraph\">Keidar-Friedman, D., Bariah, I., Domb, K., &amp; Kashkush, K. (2020). The evolutionary dynamics of a novel miniature transposable element in the wheat genome. Frontiers in Plant Science, 11, 1173.\u200f <a href=\"https:\/\/www.researchgate.net\/publication\/343338786_The_Evolutionary_Dynamics_of_a_Novel_Miniature_Transposable_Element_in_the_Wheat_Genome\" data-type=\"URL\" data-id=\"https:\/\/www.researchgate.net\/publication\/343338786_The_Evolutionary_Dynamics_of_a_Novel_Miniature_Transposable_Element_in_the_Wheat_Genome\" target=\"_blank\" rel=\"noreferrer noopener\">link<\/a><\/p>\n\n\n\n<p class=\"has-medium-font-size wp-block-paragraph\">Bariah, I., Keidar-Friedman, D., &amp; Kashkush, K. (2020). Identification and characterization of large-scale genomic rearrangements during wheat evolution. PLoS One, 15(4), e0231323.\u200f <a href=\"https:\/\/www.researchgate.net\/publication\/340643403_Identification_and_characterization_of_large-scale_genomic_rearrangements_during_wheat_evolution\" data-type=\"URL\" data-id=\"https:\/\/www.researchgate.net\/publication\/340643403_Identification_and_characterization_of_large-scale_genomic_rearrangements_during_wheat_evolution\" target=\"_blank\" rel=\"noreferrer noopener\">link<\/a><\/p>\n\n\n\n<p class=\"has-medium-font-size wp-block-paragraph\"><strong><mark style=\"background-color:rgba(0, 0, 0, 0);color:#0e9ca6\" class=\"has-inline-color\">2019<\/mark><\/strong><br>Domb, K., Keidar-Friedman, D., &amp; Kashkush, K. (2019). A novel miniature transposon-like element discovered in the coding sequence of a gene that encodes for 5-formyltetrahydrofolate in wheat. BMC plant biology, 19, 1-11.\u200f <a href=\"https:\/\/www.researchgate.net\/publication\/336980519_A_novel_miniature_transposon-like_element_discovered_in_the_coding_sequence_of_a_gene_that_encodes_for_5-formyltetrahydrofolate_in_wheat\" data-type=\"URL\" data-id=\"https:\/\/www.researchgate.net\/publication\/336980519_A_novel_miniature_transposon-like_element_discovered_in_the_coding_sequence_of_a_gene_that_encodes_for_5-formyltetrahydrofolate_in_wheat\" target=\"_blank\" rel=\"noreferrer noopener\">link<\/a><\/p>\n\n\n\n<p class=\"has-medium-font-size wp-block-paragraph\"><strong><mark style=\"background-color:rgba(0, 0, 0, 0);color:#0e9ca6\" class=\"has-inline-color\">2018<\/mark><\/strong><br>Keidar-Friedman, D., Bariah, I., &amp; Kashkush, K. (2018). Genome-wide analyses of miniature inverted-repeat transposable elements reveals new insights into the evolution of the Triticum-Aegilops group. PLoS One, 13(10), e0204972.\u200f <a rel=\"noreferrer noopener\" href=\"https:\/\/www.researchgate.net\/publication\/329906326_Genome-wide_analyses_of_miniature_inverted-repeat_transposable_elements_reveals_new_insights_into_the_evolution_of_the_Triticum-Aegilops_group\" data-type=\"URL\" data-id=\"https:\/\/www.researchgate.net\/publication\/329906326_Genome-wide_analyses_of_miniature_inverted-repeat_transposable_elements_reveals_new_insights_into_the_evolution_of_the_Triticum-Aegilops_group\" target=\"_blank\">link<\/a><\/p>\n\n\n\n<p class=\"has-medium-font-size wp-block-paragraph\">Keidar, D., Doron, C., &amp; Kashkush, K. (2018). Genome-wide analysis of a recently active retrotransposon, Au SINE, in wheat: content, distribution within subgenomes and chromosomes, and gene associations. Plant Cell Reports, 37, 193-208.\u200f <a href=\"https:\/\/www.researchgate.net\/publication\/321196679_Genome-wide_analysis_of_a_recently_active_retrotransposon_Au_SINE_in_wheat_content_distribution_within_subgenomes_and_chromosomes_and_gene_associations?_sg%5B0%5D=frVWobFwcYwIiPwLAiABcGipIfiyWAbH7_nbt8I2Du1ebRv2Fd6WMliToHWqkzqJzsAhQyQKOTwy4qnewrMfwa9OxGUhZ2ZIfXbzaVaz.iobubXGsiLD7hj_1h63jJia-KWY9O-4aHE7XDmmMaH3OuM7Ea1AokEaNyKebf9-d2bTl_597mCekbmgHAGshVQ\" data-type=\"URL\" data-id=\"https:\/\/www.researchgate.net\/publication\/321196679_Genome-wide_analysis_of_a_recently_active_retrotransposon_Au_SINE_in_wheat_content_distribution_within_subgenomes_and_chromosomes_and_gene_associations?_sg%5B0%5D=frVWobFwcYwIiPwLAiABcGipIfiyWAbH7_nbt8I2Du1ebRv2Fd6WMliToHWqkzqJzsAhQyQKOTwy4qnewrMfwa9OxGUhZ2ZIfXbzaVaz.iobubXGsiLD7hj_1h63jJia-KWY9O-4aHE7XDmmMaH3OuM7Ea1AokEaNyKebf9-d2bTl_597mCekbmgHAGshVQ\" target=\"_blank\" rel=\"noreferrer noopener\">link<\/a><\/p>\n\n\n\n<p class=\"has-medium-font-size wp-block-paragraph\"><strong><mark style=\"background-color:rgba(0, 0, 0, 0);color:#0e9ca6\" class=\"has-inline-color\">2017<\/mark><\/strong><br>Domb, K., Keidar, D., Yaakov, B., Khasdan, V., &amp; Kashkush, K. (2017). Transposable elements generate population-specific insertional patterns and allelic variation in genes of wild emmer wheat (Triticum turgidum ssp. dicoccoides). BMC plant biology, 17(1), 1-16.\u200f <a rel=\"noreferrer noopener\" href=\"https:\/\/www.researchgate.net\/publication\/320675660_Transposable_elements_generate_population-specific_insertional_patterns_and_allelic_variation_in_genes_of_wild_emmer_wheat_Triticum_turgidum_ssp_dicoccoides?_sg%5B0%5D=frVWobFwcYwIiPwLAiABcGipIfiyWAbH7_nbt8I2Du1ebRv2Fd6WMliToHWqkzqJzsAhQyQKOTwy4qnewrMfwa9OxGUhZ2ZIfXbzaVaz.iobubXGsiLD7hj_1h63jJia-KWY9O-4aHE7XDmmMaH3OuM7Ea1AokEaNyKebf9-d2bTl_597mCekbmgHAGshVQ\" data-type=\"URL\" data-id=\"https:\/\/www.researchgate.net\/publication\/320675660_Transposable_elements_generate_population-specific_insertional_patterns_and_allelic_variation_in_genes_of_wild_emmer_wheat_Triticum_turgidum_ssp_dicoccoides?_sg%5B0%5D=frVWobFwcYwIiPwLAiABcGipIfiyWAbH7_nbt8I2Du1ebRv2Fd6WMliToHWqkzqJzsAhQyQKOTwy4qnewrMfwa9OxGUhZ2ZIfXbzaVaz.iobubXGsiLD7hj_1h63jJia-KWY9O-4aHE7XDmmMaH3OuM7Ea1AokEaNyKebf9-d2bTl_597mCekbmgHAGshVQ\" target=\"_blank\">link<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">For more publications, please visit Khalil&#8217;s ResearchGate profile <a href=\"https:\/\/www.researchgate.net\/profile\/Khalil-Kashkush\/research\" data-type=\"URL\" data-id=\"https:\/\/www.researchgate.net\/profile\/Khalil-Kashkush\/research\" target=\"_blank\" rel=\"noreferrer noopener\">here<\/a><\/p>\n\n\n\n<p class=\"has-medium-font-size wp-block-paragraph\"><br><br><br><br>\u200f<\/p>\n","protected":false},"excerpt":{"rendered":"<p>2023Bariah, I., Gribun, L., &amp; Kashkush, K. (2023). Transposable elements are associated with genome-specific gene expression in bread wheat. Frontiers in Plant Science, 13, 1072232. link 2022Fridman, E., Tiwari, L., Prusty, M., Beery, A., Bodenheimer, S., Doron-Faigenboim, A., \u2026 &amp; Kenkyuka, M. D. N. D. N. (2022). Cytonuclear diversity underlying clock and growth adaptation to [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-34","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/lifewp.bgu.ac.il\/wp\/kashkush\/index.php?rest_route=\/wp\/v2\/pages\/34","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/lifewp.bgu.ac.il\/wp\/kashkush\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/lifewp.bgu.ac.il\/wp\/kashkush\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/lifewp.bgu.ac.il\/wp\/kashkush\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/lifewp.bgu.ac.il\/wp\/kashkush\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=34"}],"version-history":[{"count":4,"href":"https:\/\/lifewp.bgu.ac.il\/wp\/kashkush\/index.php?rest_route=\/wp\/v2\/pages\/34\/revisions"}],"predecessor-version":[{"id":93,"href":"https:\/\/lifewp.bgu.ac.il\/wp\/kashkush\/index.php?rest_route=\/wp\/v2\/pages\/34\/revisions\/93"}],"wp:attachment":[{"href":"https:\/\/lifewp.bgu.ac.il\/wp\/kashkush\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=34"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}